This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
hg15ToHg16.over.chain.gz file contains the liftOver data needed to
convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/hg38/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/ .
For a single file, e.g. hg38ToHg19.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz .
    (Hg19 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz' 
        -O hg38ToHg19.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

[ICO]NameLast modifiedSizeDescription

[DIR]Parent Directory  -  
[TXT]README.txt15-Jan-2014 20:55 2.3K 
[   ]hg38ToAilMel1.over.chain.gz12-Feb-2015 04:09 77M 
[   ]hg38ToAllMis1.over.chain.gz14-Feb-2015 00:31 19M 
[   ]hg38ToAmaVit1.over.chain.gz13-Feb-2015 23:20 11M 
[   ]hg38ToAnaPla1.over.chain.gz13-Feb-2015 21:21 9.8M 
[   ]hg38ToAnoCar2.over.chain.gz06-Feb-2015 14:20 8.4M 
[   ]hg38ToApaSpi1.over.chain.gz14-Feb-2015 00:01 14M 
[   ]hg38ToAraMac1.over.chain.gz17-Feb-2015 18:08 10M 
[   ]hg38ToAstMex1.over.chain.gz18-Feb-2015 17:16 5.8M 
[   ]hg38ToBosTau8.over.chain.gz16-Oct-2014 18:24 84M 
[   ]hg38ToCalJac3.over.chain.gz13-Dec-2014 15:52 57M 
[   ]hg38ToCamFer1.over.chain.gz24-Apr-2015 13:40 81M 
[   ]hg38ToCanFam3.over.chain.gz10-Apr-2015 01:22 89M 
[   ]hg38ToCapHir1.over.chain.gz28-Apr-2015 11:44 83M 
[   ]hg38ToCavPor3.over.chain.gz28-Apr-2015 09:18 85M 
[   ]hg38ToCerSim1.over.chain.gz23-Feb-2015 15:38 84M 
[   ]hg38ToCheMyd1.over.chain.gz06-Feb-2015 14:24 15M 
[   ]hg38ToChiLan1.over.chain.gz28-Apr-2015 03:54 87M 
[   ]hg38ToChlSab2.over.chain.gz11-Jul-2014 19:29 37M 
[   ]hg38ToChrAsi1.over.chain.gz20-Feb-2015 05:23 68M 
[   ]hg38ToChrPic2.over.chain.gz06-Feb-2015 14:31 16M 
[   ]hg38ToColLiv1.over.chain.gz13-Feb-2015 21:43 11M 
[   ]hg38ToConCri1.over.chain.gz29-Apr-2015 09:18 74M 
[   ]hg38ToCriGri1.over.chain.gz20-Feb-2015 19:28 73M 
[   ]hg38ToDanRer10.over.chain.gz08-Feb-2015 14:08 9.2M 
[   ]hg38ToDasNov3.over.chain.gz29-Apr-2015 13:59 85M 
[   ]hg38ToEchTel2.over.chain.gz29-Apr-2015 14:12 62M 
[   ]hg38ToEleEdw1.over.chain.gz19-Feb-2015 12:11 57M 
[   ]hg38ToEptFus1.over.chain.gz24-Apr-2015 13:37 71M 
[   ]hg38ToEquCab2.over.chain.gz23-Feb-2015 11:14 84M 
[   ]hg38ToEriEur2.over.chain.gz19-Feb-2015 13:03 55M 
[   ]hg38ToFalChe1.over.chain.gz13-Feb-2015 21:19 11M 
[   ]hg38ToFalPer1.over.chain.gz13-Feb-2015 21:29 11M 
[   ]hg38ToFelCat8.over.chain.gz29-Apr-2015 22:16 89M 
[   ]hg38ToFicAlb2.over.chain.gz18-Feb-2015 23:23 11M 
[   ]hg38ToFr3.over.chain.gz18-Feb-2015 06:17 4.4M 
[   ]hg38ToGadMor1.over.chain.gz18-Feb-2015 17:19 4.8M 
[   ]hg38ToGalGal4.over.chain.gz13-Feb-2015 21:49 11M 
[   ]hg38ToGalGal5.over.chain.gz19-Apr-2016 16:46 12M 
[   ]hg38ToGalVar1.over.chain.gz26-Apr-2016 03:10 85M 
[   ]hg38ToGasAcu1.over.chain.gz18-Feb-2015 08:29 5.2M 
[   ]hg38ToGeoFor1.over.chain.gz19-Feb-2015 01:33 10M 
[   ]hg38ToGorGor3.over.chain.gz15-Dec-2014 13:00 18M 
[   ]hg38ToGorGor4.over.chain.gz06-Jan-2016 18:59 16M 
[   ]hg38ToGorGor5.over.chain.gz25-Jun-2016 02:40 19M 
[   ]hg38ToHapBur1.over.chain.gz18-Feb-2015 12:37 4.4M 
[   ]hg38ToHetGla2.over.chain.gz29-Apr-2015 12:55 86M 
[   ]hg38ToHg19.over.chain.gz31-Dec-2013 17:24 1.2M 
[   ]hg38ToJacJac1.over.chain.gz19-Feb-2015 21:29 73M 
[   ]hg38ToLatCha1.over.chain.gz19-Feb-2015 23:56 7.2M 
[   ]hg38ToLepOcu1.over.chain.gz19-Feb-2015 05:23 6.1M 
[   ]hg38ToLepWed1.over.chain.gz29-Apr-2015 11:05 87M 
[   ]hg38ToLoxAfr3.over.chain.gz29-Apr-2015 13:44 81M 
[   ]hg38ToMacEug2.over.chain.gz19-Feb-2015 22:55 17M 
[   ]hg38ToMacFas5.over.chain.gz14-Dec-2014 01:05 39M 
[   ]hg38ToMayZeb1.over.chain.gz07-Feb-2015 09:24 4.4M 
[   ]hg38ToMelGal1.over.chain.gz13-Feb-2015 23:11 10M 
[   ]hg38ToMelGal5.over.chain.gz19-Jan-2017 16:25 11M 
[   ]hg38ToMelUnd1.over.chain.gz19-Feb-2015 01:14 10M 
[   ]hg38ToMesAur1.over.chain.gz19-Feb-2015 22:02 68M 
[   ]hg38ToMicMur1.over.chain.gz17-Mar-2015 12:00 67M 
[   ]hg38ToMicMur2.over.chain.gz06-May-2015 11:30 76M 
[   ]hg38ToMicOch1.over.chain.gz14-Feb-2015 21:46 69M 
[   ]hg38ToMm10.over.chain.gz09-Apr-2015 17:32 70M 
[   ]hg38ToMonDom5.over.chain.gz29-May-2014 11:09 34M 
[   ]hg38ToMusFur1.over.chain.gz29-Apr-2015 19:01 88M 
[   ]hg38ToMyoDav1.over.chain.gz28-Apr-2015 07:01 73M 
[   ]hg38ToMyoLuc2.over.chain.gz28-Apr-2015 04:57 70M 
[   ]hg38ToNasLar1.over.chain.gz15-Dec-2014 17:05 45M 
[   ]hg38ToNeoBri1.over.chain.gz18-Feb-2015 12:58 4.4M 
[   ]hg38ToNomLeu3.over.chain.gz12-Dec-2014 19:44 29M 
[   ]hg38ToOchPri3.over.chain.gz28-Apr-2015 02:31 69M 
[   ]hg38ToOctDeg1.over.chain.gz24-Apr-2015 20:40 82M 
[   ]hg38ToOdoRosDiv1.over.chain.gz29-Apr-2015 11:12 88M 
[   ]hg38ToOrcOrc1.over.chain.gz03-Jun-2016 22:03 82M 
[   ]hg38ToOreNil2.over.chain.gz18-Feb-2015 13:56 4.6M 
[   ]hg38ToOrnAna1.over.chain.gz13-Feb-2015 23:37 19M 
[   ]hg38ToOryAfe1.over.chain.gz23-Apr-2015 21:56 77M 
[   ]hg38ToOryCun2.over.chain.gz28-Apr-2015 04:52 80M 
[   ]hg38ToOryLat2.over.chain.gz06-Feb-2015 09:41 5.0M 
[   ]hg38ToOtoGar3.over.chain.gz23-Feb-2015 00:51 87M 
[   ]hg38ToOviAri3.over.chain.gz27-Apr-2015 19:49 83M 
[   ]hg38ToPanHod1.over.chain.gz28-Apr-2015 07:08 84M 
[   ]hg38ToPanPan1.over.chain.gz11-Dec-2014 16:48 16M 
[   ]hg38ToPanPan2.over.chain.gz24-May-2016 13:33 15M 
[   ]hg38ToPanTro4.over.chain.gz27-May-2014 10:06 14M 
[   ]hg38ToPanTro5.over.chain.gz04-Aug-2016 01:08 14M 
[   ]hg38ToPapAnu2.over.chain.gz13-Dec-2014 13:53 39M 
[   ]hg38ToPelSin1.over.chain.gz14-Feb-2015 00:13 14M 
[   ]hg38ToPetMar2.over.chain.gz06-Feb-2015 18:05 3.6M 
[   ]hg38ToPonAbe2.over.chain.gz02-Sep-2014 13:55 27M 
[   ]hg38ToPseHum1.over.chain.gz19-Feb-2015 13:39 12M 
[   ]hg38ToPteAle1.over.chain.gz29-Apr-2015 12:41 81M 
[   ]hg38ToPteVam1.over.chain.gz29-Apr-2015 10:47 76M 
[   ]hg38ToPunNye1.over.chain.gz06-Feb-2015 18:11 4.4M 
[   ]hg38ToRheMac2.over.chain.gz11-Jul-2014 19:23 35M 
[   ]hg38ToRheMac3.over.chain.gz09-Apr-2015 15:10 37M 
[   ]hg38ToRheMac8.over.chain.gz08-Feb-2016 12:40 38M 
[   ]hg38ToRhiRox1.over.chain.gz23-Feb-2015 11:26 41M 
[   ]hg38ToRn4.over.chain.gz01-Mar-2014 11:14 66M 
[   ]hg38ToRn5.over.chain.gz01-Mar-2014 11:14 68M 
[   ]hg38ToRn6.over.chain.gz14-Feb-2015 22:30 69M 
[   ]hg38ToSaiBol1.over.chain.gz13-Dec-2014 19:23 55M 
[   ]hg38ToSarHar1.over.chain.gz14-Feb-2015 01:13 31M 
[   ]hg38ToSorAra2.over.chain.gz20-Feb-2015 00:38 60M 
[   ]hg38ToSpeTri2.over.chain.gz29-Apr-2015 13:05 89M 
[   ]hg38ToSusScr3.over.chain.gz29-Apr-2015 11:32 81M 
[   ]hg38ToTaeGut2.over.chain.gz19-Feb-2015 21:26 15M 
[   ]hg38ToTakFla1.over.chain.gz18-Feb-2015 10:59 4.0M 
[   ]hg38ToTarSyr2.over.chain.gz12-Dec-2014 15:32 84M 
[   ]hg38ToTetNig2.over.chain.gz17-Feb-2015 23:57 4.3M 
[   ]hg38ToTriMan1.over.chain.gz29-Apr-2015 14:54 79M 
[   ]hg38ToTupBel1.over.chain.gz27-Mar-2015 14:12 70M 
[   ]hg38ToTupChi1.over.chain.gz19-Feb-2015 10:39 82M 
[   ]hg38ToTurTru2.over.chain.gz29-Apr-2015 10:34 84M 
[   ]hg38ToVicPac2.over.chain.gz29-Apr-2015 11:55 82M 
[   ]hg38ToXenTro7.over.chain.gz19-Feb-2015 22:44 10M 
[   ]hg38ToXipMac1.over.chain.gz06-Feb-2015 17:56 4.9M 
[   ]hg38ToZonAlb1.over.chain.gz18-Feb-2015 17:32 11M 
[TXT]md5sum.txt19-Jan-2017 16:38 6.9K 

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